{"id":70,"date":"2017-04-06T19:00:16","date_gmt":"2017-04-06T19:00:16","guid":{"rendered":"http:\/\/nmr.sdsu.edu\/?page_id=70"},"modified":"2022-09-20T23:23:36","modified_gmt":"2022-09-20T23:23:36","slug":"resources","status":"publish","type":"page","link":"https:\/\/nmr.sdsu.edu\/index.php\/resources\/","title":{"rendered":"User Guides and Resources"},"content":{"rendered":"<h3><strong>User Guides<\/strong><\/h3>\n<p><span style=\"text-decoration: underline;\">Data Acquisition:<\/span><\/p>\n<p><strong>Varian VNMRS 400 and 500<\/strong><br \/>\n<a href=\"https:\/\/drive.google.com\/open?id=1McS8X6BizbwQbE1q9xxrcl79Ulge9LbL\">Using the VNMRS 400 in Manual Mode &#8211; Quick Guide<\/a><br \/>\n<a href=\"https:\/\/drive.google.com\/file\/d\/0B3AK9x1uNS1CQTdJM1NaWjkweGc\/view?usp=sharing&amp;resourcekey=0-oWUC5sVa8G9m9L-aTdDAdA\" target=\"_blank\" rel=\"noopener noreferrer\">Using the VNMRS 400 in Autosampler Mode &#8211; Quick Guide<\/a><br \/>\n<a href=\"https:\/\/drive.google.com\/file\/d\/0B3AK9x1uNS1CWEw0Q284UmtGcnc\/view?usp=sharing&amp;resourcekey=0-xhp8I1nyeBqHp9QVWJnWsQ\" target=\"_blank\" rel=\"noopener noreferrer\">Submitting Samples for Overnight on the VNMRS 400 with Autosampler<\/a><br \/>\n<a href=\"https:\/\/drive.google.com\/open?id=1w8sgQOmdvALWFD7nbAC7O2MwyroRDaSA\" target=\"_blank\" rel=\"noopener noreferrer\">Manually Tuning the 500 VNMRS Penta Probe<\/a><\/p>\n<p><strong>Bruker AV1 BRU400<\/strong><\/p>\n<p><a href=\"https:\/\/drive.google.com\/open?id=1QeUOooWrTcXQbkO8sSggmUooDUFezs6a\" target=\"_blank\" rel=\"noopener noreferrer\">Using the BRU400 with Autosampler &#8211; Quick Guide<\/a><\/p>\n<p><span style=\"text-decoration: underline;\">Data Processing:<\/span><br \/>\n<a href=\"https:\/\/drive.google.com\/file\/d\/0B3AK9x1uNS1CMXFLTWtoVVIzYVE\/view?usp=sharing&amp;resourcekey=0-QklvqDUFNoqELVhMO24gkw\" target=\"_blank\" rel=\"noopener noreferrer\">Instructions for obtaining data from NMR Server<\/a><br \/>\n<a href=\"https:\/\/drive.google.com\/file\/d\/0B3AK9x1uNS1CMlp1WUJjeXFQblk\/view?usp=sharing&amp;resourcekey=0-MvCrzE_nNBg7A4K9GHYMBw\" target=\"_blank\" rel=\"noopener noreferrer\">Importing 1D Varian \/ VNMR Data into Topspin for Processing<\/a><br \/>\n<a href=\"https:\/\/drive.google.com\/file\/d\/0B3AK9x1uNS1CZmJfMWFwT0w3NzQ\/view?usp=sharing&amp;resourcekey=0-9y5D2TbSKbIEgJ3tLFRefQ\" target=\"_blank\" rel=\"noopener noreferrer\">Brief Data Processing Guide using VnmrJ<\/a><br \/>\n<a href=\"https:\/\/drive.google.com\/file\/d\/0B3AK9x1uNS1CdmhheWIzVF9icFk\/view?usp=sharing&amp;resourcekey=0-97PYFs9qA8bixMJVn8O-uA\" target=\"_blank\" rel=\"noopener noreferrer\">Brief Data Processing Guide using Topspin<\/a><\/p>\n<h3><strong>How-To Videos<\/strong><\/h3>\n<p><span style=\"text-decoration: underline;\">Data Acquisition:<\/span><br \/>\n<a href=\"https:\/\/drive.google.com\/open?id=1fceBrzh-UBOr6wPswIYCBWzeZ9wa_XTf\">Routine Proton NMR on 400 and 500: Training Video (8 min)<\/a><br \/>\n<a href=\"https:\/\/drive.google.com\/open?id=1Wdmc23YI3rwYdhzqIVCVtmeA0WqMIzms\" target=\"_blank\" rel=\"noopener noreferrer\">Using 400 Autosampler for Overnight Runs<\/a>\u00a0(7 min)<\/p>\n<p><span style=\"text-decoration: underline;\">Data Processing:<\/span><br \/>\n<a href=\"https:\/\/drive.google.com\/open?id=1Kd62ATmSRpzHgyK6amAOTaJZohZILeLH\" target=\"_blank\" rel=\"noopener noreferrer\">Basic Proton Data Processing with MestreNova<\/a>\u00a0(15 min)<br \/>\n<a href=\"https:\/\/drive.google.com\/open?id=1KQgWreF1PXxpEj3i9XeMSHlk5hndEjB4\">Importing 1D Varian \/ VNMR Data into Topspin for Processing<\/a><\/p>\n<h3><strong>Software<\/strong><\/h3>\n<ul>\n<li><a href=\"https:\/\/mestrelab.com\/\" target=\"_blank\" rel=\"noopener noreferrer\">Mestrenova &#8211; Leading NMR data processing software. Free 45 day trial<\/a><\/li>\n<li><a href=\"https:\/\/www.bruker.com\/service\/support-upgrades\/software-downloads\/nmr\/free-topspin-processing\/nmr-topspin-license-for-academia.html\" target=\"_blank\" rel=\"noopener noreferrer\">Bruker Topspin 4 &#8211; Free data processing software license for academic users.<\/a> You must register for an account using .edu email address.<\/li>\n<li><a href=\"http:\/\/nmr.cemhti.cnrs-orleans.fr\/Dmfit\/Default.aspx\" target=\"_blank\" rel=\"noopener noreferrer\">DMFit &#8211; leading solid-state NMR fitting tool for SSNMR data analysis<\/a><\/li>\n<li><a href=\"https:\/\/www.nmrbox.org\/\" target=\"_blank\" rel=\"noopener noreferrer\">NMRBox &#8211; Virtual Machine with pre-installed NMR software and tools<\/a>, including Topspin, MestreNova, NMRPipe, DOSY Toolbox, and many more.<\/li>\n<\/ul>\n<h3><strong>Educational Magnetic Resonance Resources<\/strong><\/h3>\n<ul>\n<li><a href=\"https:\/\/www.khanacademy.org\/science\/organic-chemistry\/spectroscopy-jay\/proton-nmr\/v\/introduction-to-proton-nmr\" target=\"_blank\" rel=\"noopener noreferrer\">https:\/\/www.khanacademy.org\/science\/organic-chemistry\/spectroscopy-jay\/proton-nmr\/v\/introduction-to-proton-nmr<\/a>. Excellent series of videos from Khan Academy, introducing Proton NMR concepts.<\/li>\n<li><a href=\"http:\/\/www.cis.rit.edu\/htbooks\/nmr\/nmr-main.htm\">http:\/\/www.cis.rit.edu\/htbooks\/nmr\/nmr-main.htm<\/a>. \u00a0Basics of NMR, online interactive textbook by Joseph P. Hornak, PhD<\/li>\n<li><a href=\"http:\/\/demonstrations.wolfram.com\/NMRSignalProcessingLabTwoSpins12\/\">http:\/\/demonstrations.wolfram.com\/NMRSignalProcessingLabTwoSpins12\/<\/a>.\u00a0 Interactive demonstration for NMR signal acquisition and data processing.<\/li>\n<li><a href=\"http:\/\/www-keeler.ch.cam.ac.uk\/lectures\/Irvine\/\">http:\/\/www-keeler.ch.cam.ac.uk\/lectures\/Irvine\/<\/a>.\u00a0 Lecture notes from James Keeler, author of the excellent NMR textbook\u00a0Understanding NMR Spectroscopy<\/li>\n<li><a href=\"http:\/\/u-of-o-nmr-facility.blogspot.com\/\">http:\/\/u-of-o-nmr-facility.blogspot.com\/<\/a>NMR Blog from the University of Ottawa.<\/li>\n<li><a href=\"http:\/\/www2.chemistry.msu.edu\/faculty\/reusch\/VirtTxtJml\/Spectrpy\/nmr\/nmr1.htm\">http:\/\/www2.chemistry.msu.edu\/faculty\/reusch\/VirtTxtJml\/Spectrpy\/nmr\/nmr1.htm<\/a> Animated brief introduction to NMR.<\/li>\n<li><a href=\"http:\/\/www.grandinetti.org\/resources\/Teaching\/Chem7160\/Notes\/NMRftp.pdf\">http:\/\/www.grandinetti.org\/resources\/Teaching\/Chem7160\/Notes\/NMRftp.pdf<\/a>. \u00a0NMR resource including discussions of NMR history, basic and advanced theory, discussion of major NMR topics such as relaxation, chemical shift, exchange, multi-dimensional NMR, hardware reviews, and much more.<\/li>\n<\/ul>\n<h3><strong>Practical NMR Resources<\/strong><\/h3>\n<ul>\n<li><a href=\"http:\/\/www2.chem.umd.edu\/nmr\/reference\/isotope_solvent.pdf\" target=\"_blank\" rel=\"noopener noreferrer\">NMR solvent chart from Cambridge Isotopes<\/a><\/li>\n<li><a href=\"http:\/\/www.bruker-nmr.de\/guide\/eNMR\/chem\/NMRnuclei.html\">http:\/\/www.bruker-nmr.de\/guide\/eNMR\/chem\/NMRnuclei.html<\/a>\u00a0NMR Periodic Table<\/li>\n<li><a href=\"http:\/\/www.pascal-man.com\/\" target=\"_blank\" rel=\"noopener noreferrer\">http:\/\/www.pascal-man.com\/<\/a>\u00a0Good resource for papers and links on solid state and quadrupolar NMR<\/li>\n<li><a href=\"http:\/\/www.nmrdb.org\/new_predictor\/\" target=\"_blank\" rel=\"noopener noreferrer\">http:\/\/www.nmrdb.org\/new_predictor\/<\/a>. \u00a0Online resource for predicting standard 1D and 2D NMR spectra<\/li>\n<li><a href=\"http:\/\/www.chenomix.com\/\" target=\"_blank\" rel=\"noopener noreferrer\">http:\/\/www.chenomx.com<\/a>\u00a0&#8211; this is Chenomx web-site where you can download free evaluation version of Chenomx NMR Suite, find User Guide, library of compounds and other useful information.<\/li>\n<li><a href=\"http:\/\/www.chemspider.com\/\" target=\"_blank\" rel=\"noopener noreferrer\">http:\/\/www.chemspider.com\/<\/a>. \u00a0Good resource for information on organic compounds. Often times there are either simulated or user-submitted NMR spectra available.<\/li>\n<li>\n<div class=\"page\" title=\"Page 1\"><a href=\"http:\/\/sdbs.db.aist.go.jp\/sdbs\/cgi-bin\/cre_index.cgi?lang=eng\">http:\/\/sdbs.db.aist.go.jp\/sdbs\/cgi-bin\/cre_index.cgi?lang=eng<\/a>\u00a0 \u00a0Spectral Database of Organic Compounds<\/div>\n<\/li>\n<li><a href=\"http:\/\/www.chem.wisc.edu\/areas\/reich\/chem605\/index.htm\" target=\"_blank\" rel=\"noopener noreferrer\">http:\/\/www.chem.wisc.edu\/areas\/reich\/chem605\/index.htm<\/a>. \u00a0very useful website for a course in structure determination using NMR.\u00a0 Included are chemical shift ranges, J-coupling values, relaxation and NOE discussions, and much more.\u00a0 University of Wisconsin-Madison<\/li>\n<li><a href=\"http:\/\/matematicas.udea.edu.co\/~carlopez\/practical_guide_nmr_1994_2002.pdf\" target=\"_blank\" rel=\"noopener noreferrer\">http:\/\/matematicas.udea.edu.co\/~carlopez\/practical_guide_nmr_1994_2002.pdf<\/a>. \u00a0Guide for multiplet analysis of 1H NMR spectroscopy<\/li>\n<li><a href=\"http:\/\/www.acornnmr.com\/Downloads\/shimming.pdf\">Shimming Ain&#8217;t Magic<\/a> &#8211; Practical guide for how to shim an NMR spectrometer by hand.<\/li>\n<li><a href=\"http:\/\/chem.ch.huji.ac.il\/nmr\/\" target=\"_blank\" rel=\"noopener noreferrer\">http:\/\/chem.ch.huji.ac.il\/nmr\/<\/a>. \u00a0Excellent NMR resource that includes information on both common and rare NMR nuclei, liquid-state and solid-state NMR information, multi-dimensional NMR techniques, NMR relaxation, and much more.<\/li>\n<li><a href=\"http:\/\/www.cryst.bbk.ac.uk\/PPS2\/projects\/schirra\/html\/home.htm\">http:\/\/www.cryst.bbk.ac.uk\/PPS2\/projects\/schirra\/html\/home.htm<\/a>\u00a0 \u00a0Introduction to structure determination of proteins using NMR.<\/li>\n<li><a href=\"http:\/\/www.bmrb.wisc.edu\/\" target=\"_blank\" rel=\"noopener noreferrer\">http:\/\/www.bmrb.wisc.edu\/<\/a>. \u00a0Biological Magnetic Resonance Data Bank.\u00a0 View and submit NMR spectroscopic data for biological macromolecules and metabolites.<\/li>\n<li><a href=\"http:\/\/www.protein-nmr.org.uk\/\">http:\/\/www.protein-nmr.org.uk\/<\/a>. \u00a0A practical guide to protein NMR &#8211; Assignment strategies, software links, general NMR information<\/li>\n<li><a href=\"http:\/\/www.nmr2.buffalo.edu\/resources\/edu\/matr\/nmr2_2004.pdf\">http:\/\/www.nmr2.buffalo.edu\/resources\/edu\/matr\/nmr2_2004.pdf<\/a>\u00a0&#8211; brief introduction to NMR Spectroscopy of Proteins<\/li>\n<li><a href=\"http:\/\/www.theresonance.com\/\">http:\/\/www.theresonance.com\/<\/a>\u00a0\u00a0General NMR news, recent research highlights, video webinars. Powered by Bruker.<\/li>\n<li><a href=\"http:\/\/www2.chemistry.msu.edu\/facilities\/nmr\/NMR_Artifacts.html\">http:\/\/www2.chemistry.msu.edu\/facilities\/nmr\/NMR_Artifacts.html<\/a>\u00a0 List of common NMR artifacts and problems, and troubleshooting suggestions<\/li>\n<\/ul>\n","protected":false},"excerpt":{"rendered":"<p>User Guides Data Acquisition: Varian VNMRS 400 and 500 Using the VNMRS 400 in Manual Mode &#8211; Quick Guide Using the VNMRS 400 in Autosampler Mode &#8211; Quick Guide Submitting Samples for Overnight on the VNMRS 400 with Autosampler Manually &hellip; <a href=\"https:\/\/nmr.sdsu.edu\/index.php\/resources\/\">Continue reading <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":3,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-70","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/nmr.sdsu.edu\/index.php\/wp-json\/wp\/v2\/pages\/70","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/nmr.sdsu.edu\/index.php\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/nmr.sdsu.edu\/index.php\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/nmr.sdsu.edu\/index.php\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/nmr.sdsu.edu\/index.php\/wp-json\/wp\/v2\/comments?post=70"}],"version-history":[{"count":24,"href":"https:\/\/nmr.sdsu.edu\/index.php\/wp-json\/wp\/v2\/pages\/70\/revisions"}],"predecessor-version":[{"id":345,"href":"https:\/\/nmr.sdsu.edu\/index.php\/wp-json\/wp\/v2\/pages\/70\/revisions\/345"}],"wp:attachment":[{"href":"https:\/\/nmr.sdsu.edu\/index.php\/wp-json\/wp\/v2\/media?parent=70"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}